Ha Duc Chu , Ham Huy Le , Quynh Thi Le Ngoc , Quyen Thi Ha , Tuan Anh Do , Hong Viet La , Bach Duc Nguyen , Gioi Huy Dong and Thao Duc Le *

* Corresponding author: Thao Duc Le (email: leducthao@agi.vaas.vn)

Main Article Content

Abstract

Amino acid transporters (AATs) are central to nitrogen allocation, amino acid distribution, and metabolic adjustment in plants, but this gene family has not been systematically characterized in cultivated peanut (Arachis hypogaea). In this study, 30 AAT genes were identified from the peanut genome and analyzed for chromosomal distribution, protein properties, gene structure, phylogenetic relationships, and expression profiles. The identified ArahyAAT genes were unevenly distributed across 18 chromosomes and showed marked variation in exon-intron organization, which indicates structural diversification within the family. Transcriptome analysis revealed different expression patterns across vegetative and reproductive tissues, with several genes showing preferential expression in roots, nodules, and reproductive organs. To assess their stress responsiveness, five root low-expression genes were selected for RT-qPCR analysis under drought stress and combined drought stress plus charcoal rot infection. ArahyAAT04, ArahyAAT09, and ArahyAAT21 were induced under drought stress, while ArahyAAT07 showed strong induction under the combined treatment. ArahyAAT23 showed limited transcriptional change across the tested conditions. These results suggest that specific ArahyAAT genes may contribute to stress-associated amino acid transport and metabolic adjustment in peanut roots. This study provides a genome-wide characterization and expression analysis of the peanut AAT gene family and identifies candidate genes for future functional studies on...

Keywords: Amino acid transporter, Arachis hypogaea, charcoal rot, drought stress, gene family

Article Details

References

Bertioli, D. J., Cannon, S. B., Froenicke, L., Huang, G., Farmer, A. D., Cannon, E. K., … & Ozias-Akins, P. (2016). The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nat Genet, 48(4), 438-446. https://doi.org/10.1038/ng.3517

Clough, E., Barrett, T., Wilhite, S. E., Ledoux, P., Evangelista, C., Kim, I. F., … & Soboleva, A. (2024). NCBI GEO: archive for gene expression and epigenomics data sets: 23-year update. Nucleic Acids Res, 52(D1), D138-D144. https://doi.org/10.1093/nar/gkad965

Gasteiger, E., Gattiker, A., Hoogland, C., Ivanyi, I., Appel, R. D., & Bairoch, A. (2003). ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res, 31(13), 3784-3788. https://doi.org/10.1093/nar/gkg563

Goodstein, D. M., Shu, S., Howson, R., Neupane, R., Hayes, R. D., Fazo, J., … & Rokhsar, D. S. (2012). Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res, 40(D1), D1178-D1186. https://doi.org/10.1093/nar/gkr944

Chu, H. D., Tran, T. T. H., Le, T. N. Q., Dong, H. G., Hong, V. L., Man, T. L., & Phi, B. C. (2025). Bioinformatic characterization of the mitogen-activated protein kinase genes in wild Arachis species with expression insights in Arachis hypogaea. J Trop Biodivers Biotechnol, 10(4), jtbb15909. https://doi.org/10.22146/jtbb.15909

Hu, B., Jin, J., Guo, A. Y., Zhang, H., Luo, J., & Gao, G. (2015). GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics, 31(8), 1296-1297. https://doi.org/10.1093/bioinformatics/btu817

Ku, Y. S., Cheng, S. S., Ng, M. S., Chung, G., & Lam, H. M. (2022). The tiny companion matters: The important role of protons in active transports in plants. Int J Mol Sci, 23(5), 2824. https://doi.org/10.3390/ijms23052824

Kumar, S., Stecher, G., Suleski, M., Sanderford, M., Sharma, S., & Tamura, K. (2024). MEGA12: Molecular Evolutionary Genetic Analysis version 12 for adaptive and green computing. Mol Biol Evol, 41(12), msae263. https://doi.org/10.1093/molbev/msae263

Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., … & Higgins, D. G. (2007). Clustal W and Clustal X version 2.0. Bioinformatics, 23(21), 2947-2948. https://doi.org/10.1093/bioinformatics/btm404

Li, H., Jiang, C., Liu, J., Zhang, P., Li, L., Li, R., … & Qin, P. (2025). Genome-wide identification of the AAT gene family in quinoa and analysis of its expression pattern under abiotic stresses. BMC Genomics, 26(1), 298. https://doi.org/10.1186/s12864-025-11491-3

Martinez-Salgado, S. J., Andrade-Hoyos, P., Parraguirre Lezama, C., Rivera-Tapia, A., Luna-Cruz, A., & Romero-Arenas, O. (2021). Biological control of charcoal rot in peanut crop through strains of Trichoderma spp., in Puebla, Mexico. Plants, 10(12), 2630. https://doi.org/10.3390/plants10122630

Mingrou, L., Guo, S., Ho, C. T., & Bai, N. (2022). Review on chemical compositions and biological activities of peanut (Arachis hypogeae L.). J Food Biochem, 46(7), e14119. https://doi.org/10.1111/jfbc.14119

Mistry, J., Chuguransky, S., Williams, L., Qureshi, M., Salazar, G. A., Sonnhammer, E. L. L., … & Bateman, A. (2021). Pfam: The protein families database in 2021. Nucleic Acids Res, 49(D1), D412-D419. https://doi.org/10.1093/nar/gkaa913

Nanjareddy, K., Guerrero-Carrillo, M. F., Lara, M., & Arthikala, M. K. (2024). Genome-wide identification and comparative analysis of the Amino Acid Transporter (AAT) gene family and their roles during Phaseolus vulgaris symbioses. Funct Integr Genomics, 24(2), 47. https://doi.org/10.1007/s10142-024-01331-0

Ortiz-Lopez, A., Chang, H., & Bush, D. R. (2000). Amino acid transporters in plants. Biochim Biophys Acta, 1465(1-2), 275-280. https://doi.org/10.1016/s0005-2736(00)00144-9

Patel, J., Khandwal, D., Choudhary, B., Ardeshana, D., Jha, R. K., Tanna, B., … & Siddique, K. H. M. (2022). Differential physio-biochemical and metabolic responses of peanut (Arachis hypogaea L.) under multiple abiotic stress conditions. Int J Mol Sci, 23(2), 660. https://doi.org/10.3390/ijms23020660

Pokhrel, S., Kharel, P., Pandey, S., Botton, S., Nugraha, G. T., Holbrook, C., & Ozias-Akins, P. (2024). Understanding the impacts of drought on peanuts (Arachis hypogaea L.): exploring physio-genetic mechanisms to develop drought-resilient peanut cultivars. Front Genet, 15(1), 1492434. https://doi.org/10.3389/fgene.2024.1492434

Reiser, L., Subramaniam, S., Li, D., & Huala, E. (2017). Using the Arabidopsis Information Resource (TAIR) to find information about Arabidopsis genes. Curr Protoc Bioinformatics, 2(10), e574. https://doi.org/10.1002/cpbi.36

Subedi, A., Hay, F., & Pethybridge, S. J. (2025). First report of charcoal rot caused by Macrophomina phaseolina on dry beans in New York, United States. Plant Dis, 6(25), 1195. https://doi.org/10.1094/PDIS-06-25-1195-PDN

Tian, R., Yang, Y., & Chen, M. (2020). Genome-wide survey of the amino acid transporter gene family in wheat (Triticum aestivum L.): Identification, expression analysis and response to abiotic stress. Int J Biol Macromol, 162(1), 1372-1387. https://doi.org/10.1016/j.ijbiomac.2020.07.302

Wang, X., Yang, X., Feng, Y., Dang, P., Wang, W., Graze, R., … & Chen, C. (2021). Transcriptome profile reveals drought-induced genes preferentially expressed in response to water deficit in cultivated peanut (Arachis hypogaea L.). Front Plant Sci, 12(1), 645291. https://doi.org/10.3389/fpls.2021.645291

Yang, G., Wei, Q., Huang, H., & Xia, J. (2020). Amino acid transporters in plant cells: A brief review. Plants, 9(8), 967. https://doi.org/10.3390/plants9080967

Yao, X., Nie, J., Bai, R., & Sui, X. (2020). Amino acid transporters in plants: Identification and function. Plants, 9(8), 972. https://doi.org/10.3390/plants9080972

Yao, X., Sui, X., & Zhang, Y. (2025). Amino acid metabolism and transporters in plant-pathogen interactions: Mechanisms and implications. Plant Cell Environ, 48(8), 6086-6098. https://doi.org/10.1111/pce.15594

Ye, J., Coulouris, G., Zaretskaya, I., Cutcutache, I., Rozen, S., & Madden, T. L. (2012). Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics, 13(1), 134. https://doi.org/10.1186/1471-2105-13-134

Zhang, H., Tang, Y., Yue, Y., & Chen, Y. (2024). Advances in the evolution research and genetic breeding of peanut. Gene, 916(1), 148425. https://doi.org/10.1016/j.gene.2024.148425

Zhao, H., Ma, H., Yu, L., Wang, X., & Zhao, J. (2012). Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One, 7(11), e49210. https://doi.org/10.1371/journal.pone.0049210

Zhong, C., He, Z., Liu, Y., Li, Z., Wang, X., Jiang, C., … & Yu, H. (2023). Genome-wide identification of TPS and TPP genes in cultivated peanut (Arachis hypogaea) and functional characterization of AhTPS9 in response to cold stress. Front Plant Sci, 14(1), 1343402. https://doi.org/10.3389/fpls.2023.1343402

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., ... & Varshney, R. K. (2019). The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nat Genet, 51(5), 865-876. https://doi.org/10.1038/s41588-019-0402-2